Season 1
More than Meets the Eye (Part 1)
More than Meets the Eye (Part 2)
More than Meets the Eye (Part 3)
Transport to Oblivion
Roll for It
Divide and Conquer
Fire in the Sky
S.O.S. Dinobots
Fire on the Mountain
War of the Dinobots
The Ultimate Doom (Part 1)
The Ultimate Doom (Part 2)
The Ultimate Doom (Part 3)
Countdown to Extinction
A Plague of Insecticons
Heavy Metal War

Bonus Material: Development work document

Season 2
Autobot Spike
Changing Gears
City of Steel
Attack of the Autobots
The Immobilizer
The Autobot Run
Atlantis, Arise!
Day of the Machines
Enter the Nightbird
A Prime Problem
The Core
The Insecticon Syndrome
Dinobot Island (Part 1)
Dinobot Island (Part 2)
The Master Builders
Auto Berserk
Megatron's Master Plan (Part 1)
Megatron's Master Plan (Part 2)
Desertion of the Dinobots (Part 1)
Desertion of the Dinobots (Part 2)
Blaster Blues
A Decepticon Raider in King Arthur's Court
The Golden Lagoon
The God Gambit
Make Tracks
Child's Play
Quest for Survival
The Secret of Omega Supreme
The Gambler
Sea Change
Triple Takeover
Prime Target
The Search for Alpha Trion
The Girl Who Loved Powerglide
Hoist Goes Hollywood
The Key to Vector Sigma (Part 1)
The Key to Vector Sigma (Part 2)
Aerial Assault
War Dawn
Trans-Europe Express
Cosmic Rust
Starscream's Brigade
The Revenge of Bruticus

Bonus Material: Public Service Announcements / Series update document

Season 3
Five Face of Darkness (Part 1)
Five Face of Darkness (Part 2)
Five Face of Darkness (Part 3)
Five Face of Darkness (Part 4)
Five Face of Darkness (Part 5)
The Killing Jar
Dark Awakening
Forever is a Long Time Coming
Starscream's Ghost
Thief in the Night
Surprise Party
Madman's Paradise
Nightmare Planet
Ghost in the Machine
Carnage in C-Minor
The Quintesson Journal
The Ultimate Weapon
The Big Broadcast of 2006
Fight or Flee
The Dweller in the Depths
Only Human
Grimlock's New Brain
Money Is Everything
Call of the Primitives
The Face of the Nijika
The Burden Hardest to Bear
The Return of Optimus Prime (Part 1)
The Return of Optimus Prime (Part 2)

Bonus Material: The Secret Files of Teletraan II

Season 4
The Rebirth (Part 1)
The Rebirth (Part 2)
The Rebirth (Part 3)