These storyboards can be seen in full at the Sunbow and Marvel Productions Script/Storyboard Archive.
This storyboard has the auto-combatant kick Hot Rod. In the movie, it charges into him.
These shots were cut. Although, I believe that the auto combatant's raspberry noise is in the movie -it can be heard before he says "time out, time out, time out!"
These shots were cut.
The storyboard for this shot wanted Scourge to be present. In the movie, Scourge isn't there.
The second shot was meant to be shown after the missiles turn around. In the movie, it's shown as Kup says "oh yeah, we inverted...".
This shot was somewhat simplified in the movie. In the movie, the shot doesn't pan back, and only one of the shuttles is shown.
This storyboard wanted to show the shuttle from the front, but in the movie, it's shown from the side, using the same shot from earlier.
This shot got completely changed from what the storyboard wanted to show. Notice how Kup was originally supposed to say "oh no!". In the movie, he says "yeah, but will we survive this?"
These shots were cut. There were meant to be seen before the below shot:
This storyboard doesn't mention having Scourge in the shot, but in the movie, he's there.
This storyboard wanted to have Galvatron's ship in the shot, but in the movie, the ship isn't there.
These shots were cut. They were meant to be seen after Cyclonus makes his first attack on the shuttle.
The shot on the left was cut. Notice that on the right shot, Hot Rod originally said "abandon ship". In the movie, he says "we're gonna crash!"
The right shot was cut.
The storyboard for this shot doesn't have Springer in it, but in the movie, he can be seen.
This shot was cut. It was meant to be seen before Springer says "face it Magnus".
This storyboard wanted to have Cyclonus present during this shot. In the movie, he's not seen here.
These shots were cut. They were meant to be shown after Scourge helps Galvatron back up.
The storyboard for this shot wanted Blurr to be seen, but in the movie, he's not there.